The ISME Journal - Table of Contents alert Volume 9 Issue 3

TABLE OF CONTENTS Volume 9, Issue 3 (March 2015) In this issue Perspective Mini-Review Original Articles   Sign up for e-alerts   Recommend to your library   Web feed    Subscribe PERSPECTIVE Top Biotic interactions and temporal dynamics of the human gastrointestinal microbiota Pål Trosvik, Eric Jacques de Muinck and Nils Christian Stenseth ISME J 2015 9: 533-541; advance online publication, August 22, 2014; 10.1038/ismej.2014.147 Abstract | Full Text MINI-REVIEW Top The dual role of microbes in corrosion Nardy Kip and Johannes A van Veen ISME J 2015 9: 542-551; advance online publication, September 26, 2014; 10.1038/ismej.2014.169 Abstract | Full Text ORIGINAL ARTICLES Top Structural modulation of gut microbiota during alleviation of type 2 diabetes with a Chinese herbal formula OPEN Jia Xu, Fengmei Lian, Linhua Zhao, Yufeng Zhao, Xinyan Chen, Xu Zhang, Yun Guo, Chenhong Zhang, Qiang Zhou, Zhengsheng Xue, Xiaoyan Pang, Liping Zhao and Xiaolin Tong ISME J 2015 9: 552-562; advance online publication, October 3, 2014; 10.1038/ismej.2014.177 Abstract | Full Text Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years Jacob A Cram, Cheryl-Emiliane T Chow, Rohan Sachdeva, David M Needham, Alma E Parada, Joshua A Steele and Jed A Fuhrman ISME J 2015 9: 563-580; advance online publication, September 9, 2014; 10.1038/ismej.2014.153 Abstract | Full Text Short-term impacts of energy wood harvesting on ectomycorrhizal fungal communities of Norway spruce saplings Karoliina Huusko, Oili Tarvainen, Karita Saravesi, Taina Pennanen, Hannu Fritze, Eero Kubin and Annamari Markkola ISME J 2015 9: 581-591; advance online publication, August 29, 2014; 10.1038/ismej.2014.154 Abstract | Full Text Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean OPEN P Dreux Chappell, LeAnn P Whitney, Joselynn R Wallace, Adam I Darer, Samua Jean-Charles and Bethany D Jenkins ISME J 2015 9: 592-602; advance online publication, October 21, 2014; 10.1038/ismej.2014.171 Abstract | Full Text Magnetic nanoparticle-mediated isolation of functional bacteria in a complex microbial community Dayi Zhang, James P Berry, Di Zhu, Yun Wang, Yin Chen, Bo Jiang, Shi Huang, Harry Langford, Guanghe Li, Paul A Davison, Jian Xu, Eric Aries and Wei E Huang ISME J 2015 9: 603-614; advance online publication, September 5, 2014; 10.1038/ismej.2014.161 Abstract | Full Text Species specificity of symbiosis and secondary metabolism in ascidians Ma Diarey B Tianero, Jason C Kwan, Thomas P Wyche, Angela P Presson, Michael Koch, Louis R Barrows, Tim S Bugni and Eric W Schmidt ISME J 2015 9: 615-628; advance online publication, August 29, 2014; 10.1038/ismej.2014.152 Abstract | Full Text Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease OPEN Akiko Endo, Takayasu Watanabe, Nachiko Ogata, Takashi Nozawa, Chihiro Aikawa, Shinichi Arakawa, Fumito Maruyama, Yuichi Izumi and Ichiro Nakagawa ISME J 2015 9: 629-642; advance online publication, August 29, 2014; 10.1038/ismej.2014.155 Abstract | Full Text Functionally relevant diversity of closely related Nitrospira in activated sludge Christiane Gruber-Dorninger, Michael Pester, Katharina Kitzinger, Domenico F Savio, Alexander Loy, Thomas Rattei, Michael Wagner and Holger Daims ISME J 2015 9: 643-655; advance online publication, August 22, 2014; 10.1038/ismej.2014.156 Abstract | Full Text Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden Michael Forth, Bengt Liljebladh, Anders Stigebrandt, Per O J Hall and Alexander H Treusch ISME J 2015 9: 656-669; advance online publication, September 19, 2014; 10.1038/ismej.2014.172 Abstract | Full Text Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection Ana Lokmer and Karl Mathias Wegner ISME J 2015 9: 670-682; advance online publication, September 2, 2014; 10.1038/ismej.2014.160 Abstract | Full Text Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant Feng Ju and Tong Zhang ISME J 2015 9: 683-695; advance online publication, September 2, 2014; 10.1038/ismej.2014.162 Abstract | Full Text A novel hydrogen oxidizer amidst the sulfur-oxidizing Thiomicrospira lineage Moritz Hansen and Mirjam Perner ISME J 2015 9: 696-707; advance online publication, September 16, 2014; 10.1038/ismej.2014.173 Abstract | Full Text Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants Sebastian Lücker, Jasmin Schwarz, Christiane Gruber-Dorninger, Eva Spieck, Michael Wagner and Holger Daims ISME J 2015 9: 708-720; advance online publication, September 2, 2014; 10.1038/ismej.2014.158 Abstract | Full Text Long-term nitrogen fertilization of paddy soil shifts iron-reducing microbial community revealed by RNA-13C-acetate probing coupled with pyrosequencingOPEN Long-Jun Ding, Jian-Qiang Su, Hui-Juan Xu, Zhong-Jun Jia and Yong-Guan Zhu ISME J 2015 9: 721-734; advance online publication, August 29, 2014; 10.1038/ismej.2014.159 Abstract | Full Text A function-based screen for seeking RubisCO active clones from metagenomes: novel enzymes influencing RubisCO activity Stefanie Böhnke and Mirjam Perner ISME J 2015 9: 735-745; advance online publication, September 9, 2014; 10.1038/ismej.2014.163 Abstract | Full Text Carbon flow from volcanic CO2 into soil microbial communities of a wetland mofette Felix Beulig, Verena B Heuer, Denise M Akob, Bernhard Viehweger, Marcus Elvert, Martina Herrmann, Kai-Uwe Hinrichs and Kirsten Küsel ISME J 2015 9: 746-759; advance online publication, September 12, 2014; 10.1038/ismej.2014.148 Abstract | Full Text Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling Ian DEA Lidbury, J Colin Murrell and Yin Chen ISME J 2015 9: 760-769; advance online publication, August 22, 2014; 10.1038/ismej.2014.149 Abstract | Full Text Host adaptive immunity alters gut microbiota Husen Zhang, Joshua B Sparks, Saikumar V Karyala, Robert Settlage and Xin M Luo ISME J 2015 9: 770-781; advance online publication, September 12, 2014; 10.1038/ismej.2014.165 Abstract | Full Text Global abundance of planktonic heterotrophic protists in the deep ocean Massimo C Pernice, Irene Forn, Ana Gomes, Elena Lara, Laura Alonso-Sáez, Jesus M Arrieta, Francisca del Carmen Garcia, Victor Hernando-Morales, Roy MacKenzie, Mireia Mestre, Eva Sintes, Eva Teira, Joaquin Valencia, Marta M Varela, Dolors Vaqué, Carlos M Duarte, Josep M Gasol and Ramon Massana ISME J 2015 9: 782-792; advance online publication, October 7, 2014; 10.1038/ismej.2014.168 Abstract | Full Text